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edgeR reference group

updated 5.6 years ago by Gordon Smyth 52k • written 5.6 years ago by 15958021290 ▴ 10

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edgeR model.matrix nested design reference group

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by ri.lars ▴ 40

5

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limma reference group covariate

10.4 years ago alakatos ▴ 130

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10